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Web site map

Welcome to the Nannochloropsis portal

 

Help and infos

  • Blog and News - a friendly blog about this genome
  • Website manual – short introduction to this website features
  • About us - people and technology behind this site

Search tools

  • Whole site search - search pages and genes
  • Gene search - retrieve infos about genes

Genomics tools

  • BLAST - sequence alignment against Nannochloropsis genome, genes or proteins
  • Genomic Browser - visual chromosome/scaffold browser with annotation and RNA-Seq tracks
  • Genes Query Platform - retrieve and view lists of genes selected with complex criteria
  • NagaCyc - metabolic pathway browser
  • Primer Tools - check primers for aspecific amplification

Repository

  • FTP - download area with Fasta files, annotation and MetaCyc database
  • Genes list - interactive list of genes

 

Smart links

If you want to link to our resources you can use these smart links.

Genomic coordinates
to link to a specific position in our genomic browser you can use this structure (using scaffold name, starting base and ending base):
http://www.nannochloropsis.org/genome/NG_chr01/12000/22000 (try)

Gene coordinates
to link to a specific gene:
http://www.nannochloropsis.org/browse/Naga_100091g4 (try)
Gene annotation
to link to a specific gene:
http://www.nannochloropsis.org/gene/Naga_100091g4 (try)

 

 

 
 

 

 

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