Gene Naga_101227g1
September 05, 2018
Summary
| Coordinates: | NG_chr18 (64369-65203) |
| Function: | light harvesting complex protein |
| Chlorophyll A-B binding protein; Chlorophyll a/b binding protein domain; |
Gene expression (RPKM)
| +N (day 3) | 513.461 |
| -N (day 3) | 228.830 |
| +N (day +6) | 144.497 |
| -N (day 6) | 242.761 |
BLAST
| Accession | Description | Bit Score |
| gi|2734864|gb|AAB94637.1 | violaxanthin/chlorophyll a binding protein precursor [Nannochloropsis sp.] | 87.811 |
| gi|357542310|gb|AET85054.1 | VCP1 [Nannochloropsis sp. W2J3B] | 87.811 |
| gi|290766160|gb|ADD60136.1 | light harvesting complex protein 3 [Vaucheria litorea] | 80.878 |
| gi|298708216|emb|CBJ30555.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 80.107 |
| gi|298712459|emb|CBJ33233.1 | Light harvesting complex protein. Probably a pseudogene (no EST support, no targeting) [Ectocarpus siliculosus] | 77.411 |
| gi|387197856|gb|AFJ68824.1 | protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526] | 74.715 |
| gi|299469943|emb|CBN76797.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 72.403 |
| gi|323454655|gb|EGB10525.1 | putative plastid light harvesting protein isoform 17 [Aureococcus anophagefferens] | 69.707 |
| gi|323456899|gb|EGB12765.1 | putative plastid light harvesting protein isoform 40 [Aureococcus anophagefferens] | 69.707 |
| gi|2498370|sp|Q08584.1 | FCPA_PHATRRecName: Full=Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic; Flags: Precursor | 68.166 |
| gi|2498374|sp|Q41093.1 | FCPE_PHATRRecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor | 67.396 |
| gi|299115217|emb|CBN74050.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 67.011 |
| gi|31335213|gb|AAP44373.1 | fucoxanthin chlorophyll a/c binding protein [Pleurochrysis carterae] | 63.544 |
| gi|375332045|gb|AFA52562.1 | light-harvesting complex protein [Vaucheria litorea] | 63.159 |
| gi|2498373|sp|Q08587.1 | FCPD_PHATRRecName: Full=Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic; Flags: Precursor | 62.773 |
| gi|23168450|gb|AAN08829.1 | truncated fucoxanthin chlorophyll a/c-binding protein precursor [Cylindrotheca fusiformis] | 62.003 |
| gi|94442145|dbj|BAE93609.1 | fucoxanthin chlorophyll a/c binding protein [Pleurochrysis carterae] | 62.003 |
| gi|2498372|sp|Q08586.1 | FCPC_PHATRRecName: Full=Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic; Flags: Precursor | 61.618 |
| gi|2144175|pir| | S60048chlorophyll a/c-binding protein precursor - Giraudyopsis stellifer | 61.618 |
| gi|219112233|ref|XP_002177868.1 | protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] | 61.618 |
Protein informations
| GENE3D | G3DSA:1.10.3460.10 | |
| INTERPRO | IPR022796 | Chlorophyll A-B binding protein |
| INTERPRO | IPR023329 | Chlorophyll a/b binding protein domain |
| PFAM | PF00504 | |
| SEG | seg | |
| SUPERFAMILY | SSF103511 |