Gene Naga_101036g3
May 02, 2017
Summary
| Coordinates: | NG_chr17 (647094-649517) |
| Function: | light harvesting complex protein |
| Chlorophyll A-B binding protein; Chlorophyll a/b binding protein domain; |
Gene expression (RPKM)
| +N (day 3) | 981.409 |
| -N (day 3) | 706.626 |
| +N (day +6) | 1306.189 |
| -N (day 6) | 891.784 |
BLAST
| Accession | Description | Bit Score |
| gi|298715099|emb|CBJ27787.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 96.286 |
| gi|298715115|emb|CBJ27803.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 92.819 |
| gi|298715119|emb|CBJ27807.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 92.434 |
| gi|298715120|emb|CBJ27808.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 92.434 |
| gi|298715116|emb|CBJ27804.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 92.049 |
| gi|299117458|emb|CBN73961.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 91.663 |
| gi|298715118|emb|CBJ27806.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 91.663 |
| gi|298715114|emb|CBJ27802.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 91.278 |
| gi|298715100|emb|CBJ27788.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 89.737 |
| gi|298715102|emb|CBJ27790.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 89.352 |
| gi|77024109|gb|ABA55525.1 | chloroplast light harvesting protein isoform 9 [Isochrysis galbana] | 88.582 |
| gi|168031123|ref|XP_001768071.1 | predicted protein [Physcomitrella patens subsp. patens] | 88.197 |
| gi|298708436|emb|CBJ48499.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 85.885 |
| gi|88911206|gb|ABD58893.1 | chloroplast LI818 protein [Scenedesmus obliquus] | 85.500 |
| gi|223994783|ref|XP_002287075.1 | fucoxanthin chlorophyll a/c protein, LI818 clade [Thalassiosira pseudonana CCMP1335] | 85.115 |
| gi|145079760|tpg|DAA05932.1 | TPA_inf: chloroplast protein precursor LI818;2 [Mesostigma viride] | 84.730 |
| gi|87313195|gb|ABD37894.1 | LI818-1 protein [Mesostigma viride] | 84.730 |
| gi|32307596|gb|AAP79203.1 | chlorophyll a/b-binding protein LI818 2 [Bigelowiella natans] | 84.345 |
| gi|145079028|tpg|DAA05894.1 | TPA_inf: chloroplast protein precursor LI818;2.2 [Bigelowiella natans] | 84.345 |
| gi|168048999|ref|XP_001776952.1 | predicted protein [Physcomitrella patens subsp. patens] | 84.345 |
Protein informations
| GENE3D | G3DSA:1.10.3460.10 | |
| INTERPRO | IPR022796 | Chlorophyll A-B binding protein |
| INTERPRO | IPR023329 | Chlorophyll a/b binding protein domain |
| PFAM | PF00504 | |
| SEG | seg | |
| SUPERFAMILY | SSF103511 |