Gene Naga_100012g50
September 05, 2018
Summary
| Coordinates: | NG_scf05 (327328-328552) |
| Function: | light-harvesting protein |
| Chlorophyll A-B binding protein; Chlorophyll a/b binding protein domain; |
Gene expression (RPKM)
| +N (day 3) | 3366.191 |
| -N (day 3) | 1223.733 |
| +N (day +6) | 580.430 |
| -N (day 6) | 1531.485 |
BLAST
| Accession | Description | Bit Score |
| gi|357542310|gb|AET85054.1 | VCP1 [Nannochloropsis sp. W2J3B] | 387.882 |
| gi|2734864|gb|AAB94637.1 | violaxanthin/chlorophyll a binding protein precursor [Nannochloropsis sp.] | 369.392 |
| gi|1483334|emb|CAA68028.1 | fucoxanthin chlorophyll a /c binding protein [Heterosigma carterae] | 123.635 |
| gi|10119935|gb|AAG13004.1 | AF226859_1light harvesting protein lhcf3 [Saccharina latissima] | 120.939 |
| gi|94442145|dbj|BAE93609.1 | fucoxanthin chlorophyll a/c binding protein [Pleurochrysis carterae] | 117.857 |
| gi|387197856|gb|AFJ68824.1 | protein fucoxanthin chlorophyll a c protein [Nannochloropsis gaditana CCMP526] | 110.923 |
| gi|2498374|sp|Q41093.1 | FCPE_PHATRRecName: Full=Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic; Flags: Precursor | 109.383 |
| gi|146739108|gb|ABQ42601.1 | chloroplast chlorophyll a/c binding precursor protein [Heterosigma akashiwo] | 109.383 |
| gi|306430555|emb|CBI83418.1 | light-harvesting protein [Symbiodinium sp. clade C3] | 107.842 |
| gi|338858369|dbj|BAK42595.1 | fucoxanthin chlorophyll a/c protein [Fistulifera sp. JPCC DA0580] | 107.842 |
| gi|10119937|gb|AAG13005.1 | AF226860_1light harvesting protein lhcf4 [Saccharina latissima] | 107.457 |
| gi|190610680|gb|ACE80197.1 | chloroplast light harvesting protein lhcf5 [Saccharina japonica] | 107.071 |
| gi|306430551|emb|CBI83416.1 | light-harvesting protein [Symbiodinium sp. clade C3] | 107.071 |
| gi|27450755|gb|AAO14680.1 | AF508261_1chlorophyll A-C binding protein [Pyrocystis lunula] | 106.686 |
| gi|306430553|emb|CBI83417.1 | light-harvesting protein [Symbiodinium sp. clade C3] | 106.686 |
| gi|298712617|emb|CBJ33313.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 106.686 |
| gi|298705629|emb|CBJ28877.1 | Light harvesting complex protein [Ectocarpus siliculosus] | 105.916 |
| gi|10119933|gb|AAG13003.1 | AF226858_1light harvesting protein lhcf2 [Saccharina latissima] | 105.916 |
| gi|10119943|gb|AAG13008.1 | AF226863_1light harvesting protein lhcf7 [Saccharina latissima] | 105.916 |
| gi|2498370|sp|Q08584.1 | FCPA_PHATRRecName: Full=Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic; Flags: Precursor | 105.531 |
Protein informations
| GENE3D | G3DSA:1.10.3460.10 | |
| INTERPRO | IPR022796 | Chlorophyll A-B binding protein |
| INTERPRO | IPR023329 | Chlorophyll a/b binding protein domain |
| PFAM | PF00504 | |
| SUPERFAMILY | SSF103511 |