Comments on: Access to N.gaditana B-31 data through the NCBI http://www.nannochloropsis.org/blog/2014/02/ncbi/ A model organism for biofuel production Mon, 18 Aug 2014 15:46:06 +0000 hourly 1 https://wordpress.org/?v=4.5.2 By: Elisa Corteggiani Carpinelli http://www.nannochloropsis.org/blog/2014/02/ncbi/#comment-4119 Mon, 18 Aug 2014 15:46:06 +0000 http://www.nannochloropsis.org/blog/?p=185#comment-4119 Thank you very much Javier for reporting this issue. While the 454 reads that we released in the SRA repository (SRX390591) are long enough for BLAST, the SOLiD reads are not (SRX390681; SRX390674; SRX203194; SRX203193; SRX203198; SRX203197; SRX203196)). SOLiD reads are too short for BLAST alignment, I therefore recommend you to download the data from the SRA repository and align them using a suitable short reads aligner (such as PASS)

]]> By: Javier Gimpel http://www.nannochloropsis.org/blog/2014/02/ncbi/#comment-3976 Fri, 08 Aug 2014 17:57:52 +0000 http://www.nannochloropsis.org/blog/?p=185#comment-3976 Why do the SRX data cannot be blasted using SRA Blast?

It says either:

Invalid SRX accession(s): SRX203199

or

Failed to convert SRX SRX203199 to SRA runs

Thank you

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